Diversity over scale: Whole-slide image variety enables H&E foundation model training with fewer patches

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Authors: Christoph Bösch, John K.L. Wong, Martin Paulikat, Myroslav Zapukhlyak, Bharti Arora, Manasi Aichmüller-Ratnaparkhe, Jens Baumann, Shivani Karn, Rutuja Kamble, Swapnil Karnik, Bhushan Khedkar, Serey Vathana Chhut
+2 more Witali Aswolinskiy, Christian Aichmüller
Cited by: 3
References: 16

Abstract

Rapid progress in computational pathology is increasingly driven by vision foundation models pretrained on vast histopathology datasets. Whereas recent efforts have prioritized training on an ever-larger amount of patches, we take an alternative approach focused on data diversity. Our foundation model, Athena, was initialized from a pretrained model and trained on just 115 million tissue patches (282 k slides), several times fewer than recent histopathology foundation models. Rather than relying on patch volume or complex sampling heuristics, we maximize data diversity by randomly selecting only a moderate number of patches per whole-slide image from our diverse internal repository, which spans multiple countries, institutions, and scanner types. Evaluated on a single patch-level benchmark and four slide-level downstream tasks (two molecular and two morphological), Athena approaches the state-of-the-art and even surpasses several models trained on substantially larger datasets. This indicates that diversity across whole-slide images, rather than patch quantity alone, drives learning in histopathology foundation models.

Fields of Study & Subjects

AI in cancer detection Cell Image Analysis Techniques Digital Imaging for Blood Diseases

Publication details

Journal / source
Journal of Pathology Informatics
Publisher
Elsevier BV
Volume
21
Pages
100648–100648
Publication date
16 February 2026
Language
EN