Crystallization Solvent Design Methodology for Empagliflozin Based on a Quantitative Prediction Model of Crystal Morphology Using Molecular Dynamics and Generative Adversarial Network

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Authors: Zhanli Han, Shiyang Chai, Zehua Ren, Xinyu Zheng, Haixia Li, Lei Zhang, Xu Ji
Cited by: 0
References: 50

Abstract

Empagliflozin is a sodium-glucose cotransporter 2 (SGLT2) inhibitor that has received widespread attention in the treatment of diabetes in recent years, and it is usually prepared by solution crystallization. How to choose the appropriate crystallization solvent to obtain empagliflozin crystals with good crystal morphology and high purity is currently a key issue that urgently needs to be addressed. This paper proposes a computer-aided design/screening method for empagliflozin crystallization solvents. First, Hirshfeld surface analysis (HSA) is used to analyze the intermolecular interactions in empagliflozin crystals. Subsequently, the modified attachment energy (MAE) model is used to explore the influence of solvation on the crystal morphology of empagliflozin, and a quantitative prediction model for crystal morphology is established based on the generative adversarial network (GAN) and extreme gradient boosting (XGBoost) model. After data enhancement by GAN, the R 2 of the model performance can be increased from 0.4894 to 0.9454, and MAE, RMSE, and MAPE can be reduced to 0.1775, 0.2281, and 5.21% respectively. Next, the established quantitative prediction model is coupled with the computer-aided molecular design (CAMD) model, which is solved by the decomposition solution strategy. Finally, the crystallization solvents that meets all requirements are obtained.

Fields of Study & Subjects

Crystallization and Solubility Studies Crystallography and molecular interactions Enzyme Structure and Function

Publication details

Journal / source
Crystal Growth & Design
Volume
26
Issue
2
Pages
803–817
Publication date
8 January 2026
Language
EN