Hydroxylase Thermostability Prediction Based on Self-Trained Semisupervised Iteration and Bayesian Dynamic Tuning

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Authors: Sujuan Liu, Mengyu Yu, Lei Zhang, Dongyan Wen, Xiaotong Yu, Jianmei Luo, Chuanlei Zhang
Cited by: 1
References: 47

Abstract

Current enzyme thermostability prediction models are predominantly designed for cross-family generalization, with limited focus on hydroxylases, which restricts their accuracy and applicability in hydroxylase-specific thermostability design. In this study, we develop HyS-BST, a dedicated self-trained semisupervised framework for hydroxylase thermostability prediction. Leveraging a limited hydroxylase data set, HyS-BST integrates a self-training strategy with Bayesian dynamic tuning to achieve high-precision prediction of mutant thermostability in terms of ΔΔ G . Experimental results demonstrate that after only ten training iterations, HyS-BST attains a coefficient of determination ( R 2 ) of 0.96, a Pearson correlation coefficient (PCC) of 0.98, and a root mean squared error (RMSE) as low as 0.06 on the test set. Compared with the optimal cross-family generalization model, HyS-BST improves PCC and RMSE by approximately 70%. Overall, this framework provides a specialized, efficient, and cost-effective solution for hydroxylase thermostability prediction, substantially reducing the candidate search space and experimental resources required for downstream validation.

Fields of Study & Subjects

Machine Learning in Bioinformatics Enzyme Catalysis and Immobilization Genomics and Phylogenetic Studies

Publication details

Journal / source
Journal of Chemical Information and Modeling
Publisher
American Chemical Society (ACS)
Volume
66
Issue
6
Pages
3383–3396
Publication date
5 March 2026
Language
EN