AI-MedCraft: A Strategy-Driven AI Platform for Multi-Objective Molecular Design

View at publisher
Authors: Khaled Barakat, Michael Jordy Rojas Ruiz, Hazem Radwan Ahmed, Ehsan Shahini, Yomna Barakat
Cited by: 2
References: 35

Abstract

Small-molecule drug discovery requires balancing potency, selectivity, solubility, safety, and synthetic feasibility, among other interdependent properties. Yet most computational workflows address these properties sequentially or collapse them into fixed weighted scores. Although artificial intelligence has accelerated molecular design, many platforms struggle to handle explicit multiobjective trade-offs. Here, we present AI-MedCraft, a strategy-driven molecular design framework that applies adaptive, Pareto-guided reinforcement learning to optimize multiple objectives concurrently within a unified workflow. When structural information is available, physics-aware scoring is incorporated to support binding-competent designs. In a structure-based benchmark on the solubility rescue of the BTK inhibitor GDC-0834, AI-MedCraft achieves broader Pareto-front coverage than the scalar-reward reinforcement learning framework REINVENT 4 under matched objectives and computational cost. In a second case study, AI-MedCraft redesigns Efavirenz to retain HIV-1 reverse transcriptase engagement while reducing predicted 5-HT2A off-target binding, demonstrating its use in multiconstraint molecular optimization.

Fields of Study & Subjects

Machine Learning in Materials Science Advanced Multi-Objective Optimization Algorithms Design Education and Practice

Publication details

Journal / source
Journal of Chemical Information and Modeling
Publisher
American Chemical Society (ACS)
Volume
66
Issue
7
Pages
3424–3431
Publication date
27 March 2026
Language
EN