Structural basis of the promiscuity of the unusual Fe(II) and 2-oxoglutarate dependent human aspartate/asparagine-β-hydroxylase

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Authors: Mariska de Munnik, Amelia Brasnett, Tiankun Zhou, William K. Myers, Yicheng Wang, Kuntal Chatterjee, Anthony Tumber, Stephen Marshall, Philipp S. Simon, Pierre Aller, Anastasya Shilova, Danny Axford
+18 more Hiroki Makita, Daniel W. Paley⧓, Vandana Tiwari, Alexander T. Stead, Sebastian Dehe, Humberto S. Sanchez, Daniel J. Rosenberg, Roberto Alonso‐Mori, Asmit Bhowmick, Junko Yano, Vittal K. Yachandra, Jaehyun Park, Sehan Park, Allen M. Orville, Lennart Brewitz, Jan Kern, Christopher J. Schofield, Patrick Rabe
Cited by: 2
References: 89

Abstract

Abstract Protein-hydroxylation catalysed by Fe(II) and 2-oxoglutarate (2OG) dependent oxygenases is an important regulatory mechanism in human biology. Such oxygenases typically coordinate their Fe(II) cofactor via a conserved triad of an aspartate- or glutamate- and two histidine-residues. By contrast, aspartate/asparagine β-hydroxylase (AspH), which catalyses asparagine/aspartate-residue oxidation in epidermal growth factor-like domains (EGFDs), has only two histidine-residues (H679, H725), with a water occupying the site normally occupied by an aspartate- or glutamate-residue. We describe mechanistic studies with catalytically active AspH crystals. Turnover studies with single crystals under cryogenic conditions give (3 R )-hydroxylated EGFDs with the product alcohol coordinating Fe(II) trans to H725. Time-resolved serial crystallography of microcrystals using an acoustic droplet ejection system, coupled to X-ray emission analyses, demonstrate turnover within 1.5 s, giving a product complex in which Fe(II) is regenerated. Solution and crystallographic studies with the O 2 surrogate nitric oxide imply O 2 binds to Fe(II) trans to H725. The additional Fe-chelating water is maintained throughout AspH catalysis and is not directly involved in substrate hydroxylation, because O 2 is the sole oxygen source in alcohol products, as shown by 18 O labelling studies. The results reveal how AspH accommodates both aspartate- and asparagine-substrates and will assist in efforts targeting AspH for cancer treatment.

Fields of Study & Subjects

Metal-Catalyzed Oxygenation Mechanisms Cancer Hypoxia and Metabolism Metalloenzymes and iron-sulfur proteins

Publication details

Journal / source
Nature Communications
Publisher
Springer Science and Business Media LLC
Volume
17
Issue
1
Publication date
25 February 2026
Language
EN