A chromosomal haplotype-resolved genome assembly of Cuphea hookeriana

Scientific Data 2026 Open access

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Authors: Cuihua Gu, Jie Wang, Guozhe Zhang, Dan Peng, Zhibin Li, Simei Ren, Zhiqiang Wu, Liyuan Yang
DOI: 10.1038/s41597-026-06830-2
Cited by: 1
References: 42

Abstract

Cuphea hookeriana (Lythraceae) is an evergreen flowering shrub native to tropical and subtropical regions, serving as an ornamental plant in landscaping and as a raw material for industry and agriculture. Here, we assembled a haplotype-resolved chromosomal genome for C. hookeriana (2n = 3x = 24) based on HiFi and Hi-C sequencing datasets. The genome was assembled into 16 chromosomes with a total size of 498,761,099 bp, comprising 248,233,948 bp and 240,972,969 bp for haplotypes A and B, respectively. BUSCO evaluation indicated an assembly completeness of 97.7% C value. Approximately 30,000 genes were annotated for each haplotype, achieving a BUSCO complete score of 97%.

Fields of Study & Subjects

Genomics and Phylogenetic Studies Biological and pharmacological studies of plants Plant Virus Research Studies

Publication details

Journal / source
Scientific Data
Publisher
Springer Science and Business Media LLC
Volume
13
Issue
1
Publication date
13 February 2026
Language
EN