2025 Ginkgo Datapoints Antibody Developability Competition outcomes: limited model performance and a call for data standardization

Read full text
Authors: Lood van Niekerk, Joshua Moller, Seth Ritter, Porfirio Quintero-Cadena, Rich Cohen, Georgia Channing, Michael Chungyoun, Laura Rand, Alexander Smith, Aanal Bhatt, Yolaine Pierre, Blake Harris
+23 more Xiang Ao, Lucía Daniela Grippo, Maximilian Schwenk, Adam Rosenbaum, Olga Allen, Nimra Asi, Jiang Zhu, Aviral Singh, Daksh Sammi, Rushikesh Jadhav, Antonín Dušek, Shyam Chandra, Valentin Badea, Nels Thorsteinson, Nathaniel L Blalock, J Kim, Oliver M. Turnbull, Ameya Kulkarni, Vivek Kohar, Netsanet Gebremedhin, Charlotte M. Deane, Peter M. Tessier, Ammar Arsiwala
Cited by: 5
References: 33

Abstract

The Ginkgo Datapoints Antibody Developability (AbDev) Competition, a blinded benchmark for developability prediction characterized entirely on a single, industrial-scale experimental platform, was conducted from September 8 to November 18, 2025. We benchmarked predictors across five biophysical properties - hydrophobicity, thermostability, self-association, expression titer, and polyreactivity - using a public training set of 246 clinical antibodies and a blinded, held-out test set of 80 antibodies. We received submissions from 113 teams spanning 25 countries, 38 companies, and 39 universities. Winning submissions differed by assay. Top Spearman's ρ values on the test set reached 0.708 (hydrophobicity), 0.392 (thermostability), 0.356 (polyreactivity), 0.337 (self-association), and 0.310 (titer). Cross-validation scores from the public training set consistently exceeded held-out test performance, indicating overfitting and limited out-of-distribution generalization. Together, these results provide a standardized snapshot of current antibody developability modeling capabilities and highlight a key bottleneck: available datasets are too small and heterogeneous to support robust, assay-spanning prediction. Meaningful progress will require larger, standardized, and diverse experimental datasets - with harmonized protocols and rich metadata - to train and validate models that generalize reliably for future antibody discovery campaigns.

Fields of Study & Subjects

Ginkgo biloba and Cashew Applications Transgenic Plants and Applications Biotechnology and Related Fields

Publication details

Journal / source
mAbs
Publisher
Informa UK Limited
Volume
18
Issue
1
Pages
2634216–2634216
Publication date
22 February 2026
Language
EN