CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis

Microbiology Resource Announcements 2026 Open access

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Authors: Olusola S. Olagoke, Timothy D. Read, Deborah Dean
DOI: 10.1128/mra.01470-25
Cited by: 1
References: 4

Abstract

Genome Assembly Pipeline (CtGAP) 2.0, an enhanced version of CtGAP, that provides a seamless installation process-eliminating the need for multiple standalone tools-and a streamlined command-line interface, introduces automatic assembly quality scoring and selection for downstream analyses, and integrates chromosome and plasmid typing along with phylogenomics.

Fields of Study & Subjects

Reproductive tract infections research Plant Taxonomy and Phylogenetics Plant and fungal interactions

Publication details

Journal / source
Microbiology Resource Announcements
Publisher
American Society for Microbiology
Volume
15
Issue
3
Pages
e0147025–e0147025
Publication date
24 February 2026
Language
EN