Use of tumor-intrinsic pathways to identify novel targets in immune-cold esophagogastric adenocarcinoma.
Abstract
451 Background: In first-line E/GEJ/G adenocarcinoma, anti-PD-1 + chemotherapy improves outcomes, yet many patients do not respond. Beyond PD-L1 CPS, tumor-intrinsic biomarkers of primary resistance remain limited. We applied a validated IFN-γ–linked T cell-inflamed (Tinfl) framework to define exclusionary programs and nominate targets. Methods: Bulk RNAseq was analyzed from TCGA ESCA/STAD adenocarcinoma (n=79, discovery) and a de novo Mayo cohort of pretreatment samples (n=74, validation) with harmonized survival and response data. Tinfl scores (160-gene signature) defined quartiles (Q1 cold, Q4 hot). Cold versus hot tumors were compared by edgeR + limma-voom to identify differentially expressed genes (DEGs) (Bioconductor v3.20). Pathway and upstream-regulator/causal-network analyses used Ingenuity Pathway Analysis seeded by top DEGs (|log2FC|>1.5, p
Fields of Study & Subjects
Cancer Immunotherapy and Biomarkers
Gastric Cancer Management and Outcomes
Esophageal Cancer Research and Treatment
Publication details
- Journal / source
- Journal of Clinical Oncology
- Volume
- 44
- Issue
- 2_suppl
- Pages
- 451–451
- Publication date
- 10 January 2026
- Language
- EN