Use of tumor-intrinsic pathways to identify novel targets in immune-cold esophagogastric adenocarcinoma.

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Authors: Ryan Christian Augustin, Michael Harrison Storandt, Riyue Bao, Harry H. Yoon, Zhaohui Jin
Cited by: 0

Abstract

451 Background: In first-line E/GEJ/G adenocarcinoma, anti-PD-1 + chemotherapy improves outcomes, yet many patients do not respond. Beyond PD-L1 CPS, tumor-intrinsic biomarkers of primary resistance remain limited. We applied a validated IFN-γ–linked T cell-inflamed (Tinfl) framework to define exclusionary programs and nominate targets. Methods: Bulk RNAseq was analyzed from TCGA ESCA/STAD adenocarcinoma (n=79, discovery) and a de novo Mayo cohort of pretreatment samples (n=74, validation) with harmonized survival and response data. Tinfl scores (160-gene signature) defined quartiles (Q1 cold, Q4 hot). Cold versus hot tumors were compared by edgeR + limma-voom to identify differentially expressed genes (DEGs) (Bioconductor v3.20). Pathway and upstream-regulator/causal-network analyses used Ingenuity Pathway Analysis seeded by top DEGs (|log2FC|>1.5, p

Fields of Study & Subjects

Cancer Immunotherapy and Biomarkers Gastric Cancer Management and Outcomes Esophageal Cancer Research and Treatment

Publication details

Journal / source
Journal of Clinical Oncology
Volume
44
Issue
2_suppl
Pages
451–451
Publication date
10 January 2026
Language
EN