ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea

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Authors: Katerina Vasileiadou, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Tereza Manousaki, Genoscope Sequencing Team, Alice Moussy
+8 more Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama Ndar, Patrick Wincker, Pedro H. Oliveira, Jean‐Marc Aury, Chiara Bortoluzzi
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References: 11

Abstract

Holothuria sanctori is a common species of sea cucumber found in the Mediterranean Sea and the Northeast Atlantic Ocean. It typically inhabits shallow rocky and sandy seabeds, where it plays a key ecological role as a sediment engineer processing organic matter ts and thereby contributing to nutrient cycling. As an edible species, H. sanctori is harvested in several countries. Although it is currently listed as a species of "Least Concern" on the IUCN Red List, the absence of a regulatory framework to prevent overexploitation poses a risk of population decline. Given its ecological significance and economic value , H. sanctori has become a focal point in both marine conservation and aquaculture research. The entirety of the genome sequence was assembled into 23 contiguous chromosomal pseudomolecules. This chromosome-level assembly encompasses 1.2 Gb, composed of 135 contigs and 46 scaffolds, with contig and scaffold N50 values of 19.9 Mb and 50.7 Mb, respectively.

Fields of Study & Subjects

Echinoderm biology and ecology Genomics and Phylogenetic Studies Chromosomal and Genetic Variations

Publication details

Journal / source
Open Research Europe
Volume
5
Pages
297–297
Publication date
27 January 2026
Language
EN