Smart microscopy: current implementations and a roadmap for interoperability

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Authors: Lucien Hinderling, Hannah S. Heil, Alfredo Rates, Philipp Seidel, P. S. Kesavan, Manuel Gunkel, Benedict Diederich, Thomas Guilbert, Rémy Torro, Otmane Bouchareb, Claire Déméautis, Célia Martin
+24 more Scott Brooks, Evangelos Sisamakis, Erwan Grandgirard, Jerome Mutterer, Harrison R. Oatman, Jared E. Toettcher, Andrii Rogov, Nelda Antonovaité, Karl Erik Johansson, Johannes Kumra Ahnlide, Oscar André, Philip Nordenfelt, Pontus Nordenfelt, Claudia Pfander, Jürgen Reymann, Talley J. Lambert, Marco R. Cosenza, Jan O. Korbel, Rainer Pepperkok, Lukas C. Kapitein, Olivier Pertz, Nils Norlin, Aliaksandr Halavatyi, Rafael Camacho
Cited by: 8
References: 97

Abstract

Abstract Smart microscopy is transforming life sciences by automating experimental imaging workflows and enabling real-time adaptation based on feedback from images and other data streams. This shift increases throughput, improves reproducibility, and expands the functional capabilities of microscopes. However, the current landscape is highly fragmented. Academic researchers often develop custom solutions for specific scientific needs, while industry offerings are typically proprietary and tied to specific hardware. This diversity, while fostering innovation, also creates major challenges in interoperability, reproducibility, and standardization, which slows progress and adaption. This article presents a collaborative effort between academic and industry leaders to survey the current state of smart microscopy, highlight representative implementations, and identify common technical and organizational barriers. We propose a framework for greater interoperability based on shared standards, modular software design, and community-driven development. Our goal is to support collaboration across the field and lay the groundwork for a more connected, reusable, and accessible smart microscopy ecosystem. We conclude with a call to action for researchers, hardware developers, and institutions to join in building an open, interoperable foundation that will unlock the full potential of smart microscopy in life science research.

Fields of Study & Subjects

Cell Image Analysis Techniques Image Processing Techniques and Applications Advanced Fluorescence Microscopy Techniques

Publication details

Journal / source
Methods in microscopy
Publisher
Walter de Gruyter GmbH
Volume
3
Issue
1
Pages
71–91
Publication date
21 February 2026
Language
EN