Linum grandiflorum primary assembly and gene annotation

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Authors: Marco Fracassetti, Panagiotis Zervakis, Zoé Postel, Aleksandra Losvik, Lucile Solér, Estelle Proux‐Wéra, Ignas Bunikis, Allison M. Churcher, Tanja Slotte
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Abstract

This dataset contains the fasta file (Lgrand_primary_v1.fasta.gz) and the gene annotation (Lgrand_primary_v1_genes.gff.gz) of Linum grandiflorum primary assembly.The annotated assembly has been deposited in the European Nucleotide Archive, ENA (Project PRJEB87189) but it is incomplete, it contains only three contigs.The genome assembly is based on PacBio HiFi and Hi-C data using Hifiasm (https://github.com/chhylp123/hifiasm).The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.html) and manually curated by NBIS.This dataset is associated with this article: Zervakis, P. I., Postel, Z., Losvik, A., Fracassetti, M., Solér, L., Proux‐Wéra, E., ... & Slotte, T. (2025). Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution. New Phytologist, 247(6), 2964-2981.

Fields of Study & Subjects

Chromosomal and Genetic Variations Genomics and Phylogenetic Studies Plant Diversity and Evolution

Publication details

Journal / source
SciLifeLab Data Repository
Publication date
1 January 2026
Language
EN
Document type
Dataset