DIA data analysis in DIA-NN against a DDA library generated in FragPipe v2

2026 Preprint Open access

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Authors: Gérémy Clair, Ernesto Satoshi Nakayasu, Weijun Qian
DOI: 10.17504/protocols.io.eq2ly642pgx9/v2
Cited by: 0

Abstract

This protocol details how we typically perform Data Independent Acquisition (DIA) search using the software DIA-NN against a Data Dependent Acquisition (DDA) library,

Fields of Study & Subjects

Advanced Proteomics Techniques and Applications Mass Spectrometry Techniques and Applications Metabolomics and Mass Spectrometry Studies

Publication details

Publication date
16 February 2026
Language
EN
Document type
Preprint