Galloylation-Driven Anchoring of the Asp325–Asp336 Ridge: The Molecular Logic Behind the Superior Kinetic Stabilization of HMPV Fusion Protein by Green Tea Dimeric Catechins

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Authors: Shrikant Shivkumar Nilewar, Santosh S. Chobe, Amruta D. Gurav, Salman B. Kureshi, Srushti B. Palande, Jesica Esther Escobar-Cabrera, Fabiola Hernández-Rosas, Tushar Janardan Pawar
Cited by: 2

Abstract

The human metapneumovirus (HMPV) Fusion (F) glycoprotein is a high-priority target for "fusion-locking" agents that stabilize its metastable prefusion state. While monomeric catechins like EGCG are known antivirals, the molecular basis for the superior activity of structurally complex dimeric catechins remains poorly understood. We employed an advanced biophysical workflow, integrating 100 ns all-atom Molecular Dynamics (MD), Free Energy Landscape (FEL) analysis, and MM/GBSA thermodynamic integration to decode the Structure-Dynamics Relationship (SDR) of 210 Camellia sinensis (Green tea) phytochemicals. The results reveal a "Galloylation-Driven Anchoring" mechanism: the galloyl moiety of prodelphinidin A2 3′-gallate provides critical electrostatic complementarity to the Asp325-Asp336 acidic ridge. FEL analysis quantitatively demonstrates that this anchoring traps the F protein in a deep, kinetically stabilized global minimum (ΔG = 9.357 kJ/mol), effectively raising the energy barrier for the fusogenic conformational shift. This study provides a rigorous thermodynamic proof-of-concept for the use of dimeric natural scaffolds as precision fusion-locking agents, offering a roadmap for experimental biophysical validation.

Fields of Study & Subjects

Tea Polyphenols and Effects Sirtuins and Resveratrol in Medicine Protein Structure and Dynamics

Publication details

Journal / source
Preprints.org
Publisher
MDPI AG
Publication date
14 January 2026
Document type
Preprint