"Docmate Annotated Medical Conversations with keyword extraction (Medical NER dataset)"
Abstract
"DocMate Medical NER Dataset: A Benchmark for Clinical Entity Recognition and Medical Conversation AnalysisThis dataset comprises 1,954 annotated clinical conversations designed for Named Entity Recognition (NER) in healthcare settings. It contains approximately 500 conversations annotated with four primary entity types: SYMPTOM, DIAGNOSIS, MEDICATION, and FAMILY_HISTORY. The dataset captures real-world medical dialogue between healthcare professionals and patients, covering diverse medical conditions including anxiety disorders, migraine, diabetes, hypertension, and sleep disorders. Each conversation is annotated using Gemini 2.5 flash with character-level entity boundaries and semantic labels, making it suitable for training and evaluating NLP models for clinical information extraction. The dataset has been structured in both raw text (TXT) and JSON annotation formats, supporting various machine learning frameworks including spaCy and other state-of-the-art NER architectures. This benchmark dataset aims to advance medical natural language processing and support development of clinical decision support systems."
Fields of Study & Subjects
Biomedical Text Mining and Ontologies
Topic Modeling
Machine Learning in Healthcare
Publication details
- Journal / source
- IEEE DataPort
- Publication date
- 3 February 2026
- Document type
- Dataset