A Web-Based User Interface for Efficient Construction and Editing of Slab Models for First-Principles Solid-State Calculations

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Authors: Akifumi SEKIHARA, Hidenobu Shiroishi
Cited by: 0
References: 5

Abstract

Preparing slab models and large supercells for first-principles surface calculations often requires tedious manual editing of atomic coordinates. We developed browser-based tools that provide synchronized coordinate-table editing and interactive 3D visualization (Mol*) for two structure models. The tools implement (i) surface transfer, which copies an optimized surface region from a thin slab to a thicker slab while preserving Cartesian coordinates, (ii) composite-supercell construction based on a user-defined tiling pattern of pre-optimized blocks, and (iii) a Python-based calculator of partial zero-point energies and vibrational enthalpies. The backend is implemented in Python using ASE and pymatgen, and the frontend is built with TypeScript/React.

Fields of Study & Subjects

Advanced Chemical Physics Studies Machine Learning in Materials Science Surface and Thin Film Phenomena

Publication details

Journal / source
Journal of Computer Chemistry Japan
Volume
25
Issue
1
Pages
19–21
Publication date
1 January 2026
Language
EN