Biosynthetic formation of the 6/7/5-odyverdiene diterpenes via a 6/10-trans-eunicellanyl intermediate

Read full text
Authors: Wenbo Ning, Wang‐Yeuk Kong, Zining Li, Xiuting Wei, Jordan Nafie, Baofu Xu, Fabrizio G. Cavassa, Pin-shuo Huang, Dean Joseph Tantillo, Jeffrey D. Rudolf
Cited by: 0

Abstract

Odyverdienes are a unique class of bacterial diterpenes possessing 6/8/4- or 6/7/5-tricyclic skeletons and the cyclization mechanism underlying their formation remains unknown. Based on their skeletons, we hypothesized that their tricyclic skel-etons pass through a neutral or cationic 6/10-eunicellane intermediate. Here, we investigated the mechanism of odyverdiene B2 synthase, SalkS from Streptomyces alkaliterrae, using site-directed mutagenesis, isotopic labeling experiments, and quantum chemical calculations. Two key shunt products, the 10-membered monocyclic 13-deoxolobophytumin A and a trans-eunicellane named alkacellene, isolated from SalkS variants and quantum chemical calculations supported the proposed mechanism to odyverdiene B2 via initial 1,10-cyclization and a cationic eunicellanyl intermediate. Deuterium labeling stud-ies also supported the occurrence of two sequential 1,2-hydride shifts that set distinctive stereocenters during eunicellanyl formation. Alkacellene was also shown to undergo acid-catalyzed cyclization to the 6/6/6/6-tetracyclic isohydropyrene, an isomer of the bacterial diterpene synthase product hydropyrene. This mechanistic study of SalkS highlights the frequent for-mation and use of eunicellanyl intermediates in diversifying bacterial diterpene biosynthesis and provides a model system to address fundamental questions involving 6/10-bicyclic ring systems.

Fields of Study & Subjects

Plant biochemistry and biosynthesis Microbial Natural Products and Biosynthesis Bioactive Natural Diterpenoids Research

Publication details

Journal / source
ChemRxiv
Publication date
9 January 2026
Document type
Preprint