visPedigree: Tidying, Analysis, and Fast Visualization of Animal and Plant Pedigrees

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Authors: Sheng Luan
Cited by: 1
References: 2

Abstract

Built on graph theory and the high-performance 'data.table' framework, this package provides a comprehensive suite of tools for tidying, pruning, and visualizing animal pedigrees. By modeling pedigrees as directed acyclic graphs using 'igraph', it ensures robust loop detection, efficient generation assignment, and sophisticated hierarchical layouts. Key features include standardizing pedigree formats, flexible ancestry tracing, and generating legible vector-based PDF graphs. A unique compaction algorithm enables the visualization of massive pedigrees (e.g., in aquaculture selective breeding population) by grouping full-sib families, maintaining structural clarity without overcrowding.

Publication details

Journal / source
CRAN: Contributed Packages
Publisher
The R Foundation
Publication date
21 January 2026
Document type
Dataset