Applying Artificial Intelligence (AI) Innovative Tools for Ecological Research and Monitoring of Transitional Water Ecosystems: A Systematic Review

Transitional water ecosystems exhibit pronounced spatio-temporal variability and increasing anthropogenic pressures, posing substantial challenges for ecological monitoring and management. Artificial Intelligence (AI), particularly Machine Learning (ML) and Deep Learning (DL), has emerged as a powerful framework for addressing the structural complexity of these systems. This systematic review synthesizes peer-reviewed studies applying ML and DL to ecological research and monitoring in transitional waters. A structured search of the Scopus® database was conducted up to 31 December 2024, and studies were screened according to predefined eligibility criteria and PRISMA 2020 guidance; methodological quality was appraised using a structured assessment framework. Ninety-six studies met the inclusion criteria. Regression was the most frequent analytical task (44.1%), followed by classification (36.2%) and clustering (19.7%), with water quality monitoring representing the dominant thematic domain. Tree-based and kernel-based ML models prevailed overall, whereas DL architectures increased markedly after 2020, particularly in remote sensing and high-dimensional applications. Despite methodological heterogeneity and variable validation practices, the evidence indicates that ML and DL approaches effectively accommodate non-linearity, data heterogeneity, and scale mismatches typical of transitional waters. Standardized validation strategies and improved model interpretability remain essential for robust ecological inference and operational implementation.