Differences in Habitat Substrate Preference Selection Among Sexes and Populations of Leptobotia elongata

Cascade hydropower development in the upper Yangtze River has substantially altered riverine habitat conditions. However, quantitative information on fish substrate preferences remains limited. Based on field surveys, six representative substrate types were identified in the Yibin and Jiangjin reaches, and substrate selection patterns of Leptobotia elongata were quantified under controlled flume conditions. This study examined sex-specific and population-level differences in substrate preference. A total of 50 samples were analyzed using one-way ANOVA and the Kolmogorov–Smirnov test. The results are summarized as follows: (1) Substrates of 40–20 mm: Individual female L. elongata exhibited the longest residence time on the 40 mm substrate (1640 s), while individual males also spent the longest time on the 40 mm substrate (1549 s). Within this substrate range, males showed a preference only for the 40 mm substrate (PR = 739), whereas females preferred three substrate types, with the strongest preference for the 40 mm substrate (PR = 7543). (2) Substrates of 10–2.5 mm: Female individuals spent the longest time on the 10 mm substrate (1468 s), and male individuals likewise showed the longest residence time on the 10 mm substrate (1568 s). In this range, males did not show a significant preference for any substrate (PR = −907), whereas females preferred three substrate types, with the 2.5 mm substrate exhibiting the highest preference intensity (PR = 2059). (3) Population-level patterns for 40–20 mm substrates: The population spent the longest time on the 40 mm substrate (1799 s) and preferred three substrate types, among which the 20 mm substrate had the highest preference ratio relative to the other preferred substrates (PR = 4750). (4) Population-level patterns for 10–2.5 mm substrates: The longest residence time was observed on the 10 mm substrate (1762 s). The population preferred three substrate types, with the 10 mm substrate showing the highest preference ratio (PR = 5709). Overall, L. elongata showed a general tendency to prefer larger-sized substrates. This preference is likely associated with enhanced habitat complexity, improved foraging opportunities, and the formation of low-velocity refuges. Our results suggest that maintaining or restoring coarse substrate patches in regulated reaches may improve habitat suitability for L. elongata and potentially benefit other benthic fishes with similar ecological requirements.