Exploratory Assessment of Iron- and Sulfate-Reducing Bacteria in Sediments Co-Contaminated with Metals and Polycyclic Aromatic Hydrocarbons

Rivers contaminated with metals and petroleum hydrocarbons, such as polycyclic aromatic hydrocarbons (PAHs), are still a problem that threatens aquatic ecosystem function. This study describes iron- and sulfate-reducing bacteria, principal drivers of anaerobic organic matter decomposition in aquatic sediments. A polyphasic approach, including culture-dependent, i.e., enumeration by Most Probable Number (MPN), and independent, Sanger and Next Generation Sequencing (NGS) techniques, as well as analytical geochemical analyses, was employed. This study found exceptionally high levels of metals (Al, Mn, Zn, and Pb), PAHs, and sulfates compared to typical freshwater environments, likely due to co-contamination from past petroleum and steel production waste. Microbial communities were dominated by the Thermoproteobacteria. Analysis of the iron-reducing community determined that Geobacter, critical for degrading organic matter using iron, manganese, or arsenic, was the most prevalent genus. Additionally, the presence of diverse groups involved in sulfur cycling, represented by dsrAB genes, high numbers of viable sulfate reducers, a higher abundance of Geobacter, and high levels of sulfate and iron suggests that the cryptic sulfur cycle (CSC) may be operational in this system. In addition, sulfate and iron reducers are known to enhance biodegradation of organic pollutants in the presence of metal oxides and sulfate, and thus warrant further investigation in this co-contaminated system.