Sustainable Strategies for Removing Advanced Oxidation Byproducts via Microbial Degradation During Petroleum Hydrocarbon Remediation

Using density functional theory (DFT) and the Gaussian 09 program, the study calculated Gibbs free energy to understand how easily each NP can transform. Results showed that only 2,6-dinitrophenol (2,6-DNP) and 2-chloro-6-nitrophenol (2-Cl-6-NP) had Gibbs free energies above 0 kJ/mol. The study also evaluated the toxicity of the NPs, leading to the identification of trinitrophenol (TNP), 2-chloro-4-nitrophenol (2-Cl-4-NP), and 2-nitrophenol (2-NP) with the highest risk scores. In the present study, binding energies were used only as comparative indicators of enzyme–substrate interaction favorability within a screening framework, rather than direct measures of catalytic degradation efficiency. The enzyme 1,2-dioxygenase from Acinetobacter baylyi ADP1 showed strong degradation effects on catechol, with significant binding energies for 2-NP, 2-Cl-4-NP, and TNP. The PS-AOP changed the degradation environment, which reduced enzymatic efficiency. The study also modified specific amino acids in enzymes to improve their performance. For example, the enzyme 1DLT-6 had a degradation increase of nearly 27% compared to the reference enzyme. Finally, we tried to measure the impact of different forces on the breakdown of nitrophenols by enzymes. We used a two-dimensional amino acid map based on enzyme–ligand interactions and a visualization of non-covalent interactions. Our findings show that van der Waals forces and electrostatic forces are the main factors affecting how well the material breaks down. From a sustainability perspective, the study highlights a promising strategy for mitigating secondary pollution, improving the environmental compatibility of PS-AOP-based remediation, and supporting safer and more sustainable restoration of petroleum hydrocarbon-contaminated soil and groundwater. These findings help strengthen the theoretical basis for developing greener post-oxidation remediation pathways.