QPX: Pathway analysis environment
Abstract
Building on our work at DBCLS BioHackathon 2023 (BH23), where we introduced QPX and promoted pathway modeling with WikiPathways (Pico et al., 2008) using PathVisio (Kutmon et al., 2015), we now focused on creating new pathway diagrams for diverse species and registering them in WikiPathways with functional annotations. In parallel, we deployed WikiPathways node data into Elasticsearch to enable fast and flexible search and integration of pathway information.
Fields of Study & Subjects
Bioinformatics and Genomic Networks
Biomedical Text Mining and Ontologies
Advanced Graph Neural Networks
Publication details
- Publisher
- Center for Open Science
- Publication date
- 6 January 2026
- Document type
- Preprint