Data underlying the publication: Combinatorial optimization of protein systems in synthetic cells

Data underlying the publication: van den Brink, M., Claassens, N.J. and Danelon, C. Combinatorial optimization of protein systems in synthetic cells. ACS Synthetic Biology (2026). https://doi.org/10.1021/acssynbio.6c00166 This dataset contains data collected during experiments as part of Marijn van den Brink's PhD project. The data was collected from 2022-2026. The raw data includes data from nanopore sequencing, confocal fluorescence microscopy, gel electrophoresis, SDS-PAGE, flow cytometry and quantitative PCR. All data processing and analysis steps are described in detail in the Methods section of the publication. The data are grouped in folders based on four levels. First, by topic: DNA replication or Phospholipid synthesis. Second, by the data type. Third, by the figure number in the publication. Fourth, within each figure folder, data are divided into raw and processed subfolders. Large DNA sequencing data (> 5 GB) are stored in separate folders in the "root directory", so they can be downloaded separately. Code or other files used to process the data are stored in the "processed data" / "method" folders.