Assessing LLMs for Serendipity Discovery in Knowledge Graphs: A Case for Drug Repurposing

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Authors: Association for Artificial Intelligence 2026, Evren Gürkan-Çavusoglu, Shrinidhi Hegde, Ao Jiao, Tuo Liang, Pengjun Lu, Chenhui Ma, Mengying Wang, Yinghui Wu, Yu Yin
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Abstract

Large Language Models (LLMs) have greatly advanced knowledge graph question answering (KGQA), yet existing systems are typically optimized for returning highly relevant but predictable answers. A missing yet desired capacity is to exploit LLMs to suggest surprise and novel (``serendipitious'') answers. In this paper, we formally define the serendipity-aware KGQA task and propose the SerenQA framework to evaluate LLMs' ability to uncover unexpected insights in scientific KGQA tasks. SerenQA includes a rigorous serendipity metric based on relevance, novelty, and surprise, along with an expert-annotated benchmark derived from the Clinical Knowledge Graph, focused on drug repurposing. Additionally, it features a structured evaluation pipeline encompassing three subtasks: knowledge retrieval, subgraph reasoning, and serendipity exploration. Our experiments reveal that while state-of-the-art LLMs perform well on retrieval, they still struggle with identifying genuinely surprising and valuable discoveries, underscoring significant room for future improvements. Our curated resources have been released as supplementary material.

Fields of Study & Subjects

Advanced Graph Neural Networks Topic Modeling Biomedical Text Mining and Ontologies

Publication details

Journal / source
Underline Science Inc.
Publication date
7 January 2026
Language
EN