Towards Data-Efficient Deep Learning for RNA 3D Structure Prediction and Design

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Authors: Association for Artificial Intelligence 2026, Yimeng Liu
Cited by: 0

Abstract

RNA 3D structure prediction remains a fundamental challenge due to limited experimental data, conformational heterogeneity, and complex folding landscapes. Inspired by breakthroughs in protein modeling, a data-efficient deep learning framework that integrates RNA language embeddings, geometric constraints, and physics-informed priors is proposed. This approach leverages self-supervised pretraining, contrastive learning, and SE(3)-equivariant architectures to capture higher-order structural relationships from scarce data. Predicted structures are evaluated using benchmark datasets, thermodynamic plausibility, and docking-based functional assessments, ensuring both structural accuracy and biophysical relevance. By advancing RNA structure prediction and design, this work aims to accelerate the development of RNA-based therapeutics, catalytic ribozymes, and precision medicine applications, while providing an open-source framework for the broader scientific community.

Fields of Study & Subjects

RNA and protein synthesis mechanisms Protein Structure and Dynamics RNA regulation and disease

Publication details

Journal / source
Underline Science Inc.
Publication date
7 January 2026
Language
EN