Training-Free Zero-Shot Anomaly Detection in 3D Brain MRI with 2D Foundation Models
Abstract
Zero-shot anomaly detection (ZSAD) has gained increasing attention in medical imaging as a way to identify abnormalities without task-specific supervision, but most advances remain limited to 2D datasets. Extending ZSAD to 3D medical images has proven challenging, with existing methods relying on slice-wise features and vision-language models, which fail to capture volumetric structure. In this paper, we introduce a fully training-free framework for ZSAD in 3D brain MRI that constructs localized volumetric tokens by aggregating multi-axis slices processed by 2D foundation models. These 3D patch tokens restore cubic spatial context and integrate directly with distance-based, batch-level anomaly detection pipelines. The framework provides compact 3D representations that are practical to compute on standard GPUs and require no fine-tuning, prompts, or supervision. Our results show that training-free, batch-based ZSAD can be effectively extended from 2D encoders to full 3D MRI volumes, offering a simple and robust approach for volumetric anomaly detection.
Fields of Study & Subjects
Anomaly Detection Techniques and Applications
Medical Image Segmentation Techniques
Brain Tumor Detection and Classification
Publication details
- Journal / source
- arXiv (Cornell University)
- Publication date
- 17 February 2026
- Language
- EN
- Document type
- Preprint