Residual Koopman Spectral Profiling for Predicting and Preventing Transformer Training Instability

Training divergence in transformers wastes compute, yet practitioners discover instability only after expensive runs begin. They therefore need an expected probability of failure for a transformer before training starts. Our study of Residual Koopman Spectral Profiling (RKSP) provides such an estimate. From a single forward pass at initialization, RKSP extracts Koopman spectral features by applying whitened dynamic mode decomposition to layer-wise residual snapshots. Our central diagnostic, the near-unit spectral mass, quantifies the fraction of modes concentrated near the unit circle, which captures instability risk. For predicting divergence across extensive configurations, this estimator achieves an AUROC of 0.995, outperforming the best gradient baseline. We further make this diagnostic actionable through Koopman Spectral Shaping (KSS), which reshapes spectra during training. We empirically validate that our method works in practice: RKSP predicts divergence at initialization, and when RKSP flags high risk, turning on KSS successfully prevents divergence. In the challenging high learning rate regime without normalization layers, KSS reduces the divergence rate from 66.7% to 12.5% and enables learning rates that are 50% to 150% higher. These findings generalize to WikiText-103 language modeling, vision transformers on CIFAR-10, and pretrained language models, including GPT-2 and LLaMA-2 up to 7B, as well as emerging architectures such as MoE, Mamba-style SSMs, and KAN.