Survival In-Context: Amortized Bayesian Survival Analysis via Prior-Fitted Networks

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Authors: Dmitrii Seletkov, Paul Hager, Georgios Kaissis, Rickmer Braren, Daniel Rueckert, Raphael Rehms
Cited by: 1

Abstract

Survival analysis is crucial for many medical applications, but remains challenging for modern machine learning due to limited data, censoring, and the heterogeneity of tabular covariates. While the prior-fitted paradigm, which relies on pretraining models on large collections of synthetic datasets, has recently facilitated tabular foundation models for classification and regression, its suitability for time-to-event modeling remains unclear. We propose a flexible survival data generation framework that defines a rich survival prior with explicit control over covariates and time-event distributions. Building on this prior, we introduce Survival In-Context (SIC), a prior-fitted in-context learning model for survival analysis that is pretrained exclusively on synthetic data. SIC is trained to approximate Bayesian posterior predictive inference under the synthetic survival prior, enabling individualized survival prediction in a single forward pass, requiring no task-specific training or hyperparameter tuning. Across a broad evaluation on real-world survival datasets, SIC achieves competitive or superior performance compared to classical and deep survival models, particularly in small and medium-sized data regimes, highlighting the promise of a prior-fitted paradigm for survival analysis. The code and pretrained models will be made available upon publication.

Fields of Study & Subjects

Machine Learning in Healthcare Statistical Methods and Inference Domain Adaptation and Few-Shot Learning

Publication details

Journal / source
arXiv (Cornell University)
Publication date
31 March 2026
Document type
Preprint