SMACs
Abstract
The dataset contains processed data, which includes two .rds files. The first .rds file is an integrated Seurat object which contains raw, processed and integrated assays/gene expression data for all five aorgans and both technologies. The other .rds file includes cell-type proportions from RCTD for each barcode/spot. Additionally, we also provide partial outputs from the SAW pipeline to run the cell segmentation method to obtain spatial single-cell data. This includes aligned BAM files, mask files, and image data.
Fields of Study & Subjects
Single-cell and spatial transcriptomics
Gene expression and cancer classification
Genomics and Chromatin Dynamics
Publication details
- Journal / source
- The University of Queensland
- Publication date
- 5 February 2026
- Language
- EN
- Document type
- Dataset