Computational library for the nutrient-unicellular-multicellular plankton modeling framework v. 1.0

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Authors: Amalia Papapostolou, Anton Vergod Almgren, Trine Frisbæk Hansen, Athanasios Kandylas, Camila Serra‐Pompei, Andre William Visser, Ken Haste Andersen
Cited by: 1
References: 85

Abstract

Abstract. The Nutrient-Unicellular-Multicellular (NUM) model is a trait-based model of unicellular and multicellular plankton that uses body size as the main structuring variable for community composition. The distinguishing feature is that body size is used for structuring predator-prey interactions and to scale all parameters. For unicellular plankton, trophic strategies across the full range from osmotrophy, phototrophy, phagotrophy and mixotrophy, are an emergent outcome of the model. Another distinguishing feature is that the multicellular component, represented by copepods, includes ontogeny, which is crucial in shaping population dynamics. In addition, the framework encompasses a nutrient pool consisting of nitrogen, silica and dissolved organic carbon (DOC) which interacts dynamically with the plankton community in three model setups: a chemostat simulating the photic zone, a water-column, and a global setup. Here we present a user-friendly Fortran-Matlab library which makes the NUM model accessible as a practical tool for marine ecologists or biogeochemical modellers. The model output is validated with in situ and satellite data and demonstrates its applicability in chemostat, water-column, and global setups.

Fields of Study & Subjects

Wastewater Treatment and Nitrogen Removal Marine and coastal ecosystems

Publication details

Journal / source
Geoscientific model development
Publisher
Copernicus GmbH
Volume
19
Issue
14
Pages
6627–6661
Publication date
22 July 2026
Language
EN