InSituPREP enables 3D single-cell mapping of interaction-associated gene programs in the breast cancer tumor microenvironment
Abstract
The archived materials include the data and analysis scripts used in this study.A general-purpose and actively maintained Python implementation (Python package) of the InSituPREP framework, designed for application to independent spatial transcriptomics datasets as well as to the ExSeq dataset analyzed in this study, is available at:https://github.com/Tal-Goldberg/InSituPREP
Fields of Study & Subjects
Single-cell and spatial transcriptomics
Cell Image Analysis Techniques
Bioinformatics and Genomic Networks
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 15 February 2026