LDoni/AmpWrap: AmpWrap v1.2.0
Abstract
ampwrap short added --trim-primers-dada2 added --species for supported 16S DADA2 databases added --asv-length auto|MIN:MAX added --remove-organelle-phyloseq added --bigdata sample-wise streaming inference path added --resource-profile safe|balanced|aggressive improved multirun behavior and final reports improved sample-name handling across the full pipeline added stricter paired-file validation, including likely R1/R2 typo detection Database management moved to a central cache by default: ~/.ampwrap/db added ampwrap db list added manifest tracking for downloaded databases validated download reachability and MD5 checksums for supported short and long databases ampwrap long improved CLI/help and database handling stabilized EMU/PR2 database setup improved sample-name handling in final outputs and reports completed smoke-tested end-to-end validation on subsampled long-read input
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 1 April 2026