MEDS-Extract

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Authors: Matthew B. A. McDermott, Robin P. van de Water, Patrick Rockenschaub
Cited by: 0

Abstract

MEDS Extract is a Python package that leverages the MEDS-Transforms framework to build efficient, reproducible ETL (Extract, Transform, Load) pipelines for converting raw electronic health record (EHR) data into the standardized MEDS format. If your dataset consists of files containing patient observations with timestamps, codes, and values, MEDS Extract can automatically convert your raw data into a compliant MEDS dataset in an efficient, scalable, and communicable way.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
7 August 2026