IntGenomicsLab/lrsomatic: 1.1.0

What's Changed Update Zenodo DOI in README.md by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/110 ASCAT GC and RT correct by @AmberVerhasselt in https://github.com/IntGenomicsLab/lrsomatic/pull/116 ASCAT pdf plots, minor channel fix by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/117 Template update to version 3.5.1 by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/118 Channel update by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/123 ascat raw segments txt files added to output by @AmberVerhasselt in https://github.com/IntGenomicsLab/lrsomatic/pull/126 Fix path pattern for rephased VCF files by @Tim-Yu in https://github.com/IntGenomicsLab/lrsomatic/pull/130 initial syntax changes and bulk modules update by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/137 add skip_m6a param by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/135 add replicates, perform QC on individual replicates before merge by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/138 Output phased variants by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/141 Add compact inline channel structure comments to key workflow files by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/140 Multiqc nanoplot by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/145 Whatshap stats by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/147 Severus min support param and skip_fibernormal by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/143 Add Claude Code GitHub Workflow by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/150 Deepvariant by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/149 Modkit by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/152 Main merge by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/154 Add pon citation by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/157 changelog by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/158 Deepvariant opt pon changes by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/160 add long_phase supplementary alignment tag to extended args by @AmberVerhasselt in https://github.com/IntGenomicsLab/lrsomatic/pull/163 added changelog and docs by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/162 template update by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/164 Bug fix consensus by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/165 updated wakhan by @ljwharbers in https://github.com/IntGenomicsLab/lrsomatic/pull/166 update default by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/168 Dev by @robert-a-forsyth in https://github.com/IntGenomicsLab/lrsomatic/pull/161 New Contributors @AmberVerhasselt made their first contribution in https://github.com/IntGenomicsLab/lrsomatic/pull/116 Full Changelog: https://github.com/IntGenomicsLab/lrsomatic/compare/1.0.0...1.1.0