hmaru/2026_cross-platform-comparison: Official Supplementary Data for Zheng et al. 2026

Overview This release (v1.0.0) contains the final version of the analysis scripts and supplementary data as described in the following publication: Zheng J, Maruyama H, Okinaga T. Cross-platform comparison of oral microbiome profiles under a unified reference database. J Osaka Dent Univ 2026; 60(1): 163-170. Paper DOI: https://doi.org/10.18905/jodu.60.1_163 Contents This version of the repository represents the state of the analysis at the time of publication, including: Quarto Analysis Modules (01-05): Full reproducible R scripts for data preprocessing, diversity analysis, and platform comparison. Rendered Reports: Interactive HTML documents providing detailed results, figures, and tables. Harmonized Data: Processed taxonomic abundance tables for both Illumina MiSeq and Oxford Nanopore Technologies. Data Availability This release is archived on Zenodo to ensure long-term availability and provides a unique DOI for this specific version of the data and code. Citation If you use the data or scripts provided in this repository, please cite the original paper above.