github.com/iwc-workflows/host-contamination-removal-short-reads/main

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Bérénice Batut, Paul Zierep
DOI: 10.5281/zenodo.17832962
Cited by: 0

Abstract

This workflow takes paired-end Illumina fastq(.gz) files and runs Bowtie to map the reads against a reference genome (human, by default) and keep only the reads that do not align. MultiQC is used to aggregate the mapping reports.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
28 May 2026