A technical comparison of spatial transcriptomics platforms across six cancer types - XeniumMT & Xenium5K

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Sergi Cervilla, Daniela Grases Mendoza, Eduard Porta-Pardo
DOI: 10.5281/zenodo.18000256
Cited by: 1

Abstract

This repository contains Xenium spatial transcriptomics data with multimodal cell segmentation. The data were generated using the Multi-Tissue (XeniumMT) and Human Prime 5K (Xenium5K) gene panels and were used in the spatial platforms comparison study by Cervilla et al. (2025). If you are interested in the same samples profiled with other spatial transcriptomics technologies, see also: Visium v1, Visium v2/CytAssist, and Visium HD: https://doi.org/10.5281/zenodo.17999961 Xenium and CosMx: https://doi.org/10.5281/zenodo.17986017

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
1 January 2026
Document type
Dataset