harutois/ConsistASR: v1.1.2

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Haruto Ishikawa
DOI: 10.5281/zenodo.18080327
Cited by: 0

Abstract

Bug fix release. Fixed CR/CRLF line-ending handling in run_indel_aware_iqtree.sh and run_indel_aware_paml.sh. Input MSA, tree, IQ-TREE .state, and PAML rst files are now normalized internally to LF line endings inside the *_indel_work/ directory. Original input files are not modified. This prevents hidden Windows-style carriage returns from causing taxon-name matching errors such as Outgroup taxon 'XXXX' not found.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
4 September 2026