github.com/aofarrel/tree_nine/matUtils_extract

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Ash O’Farrell
DOI: 10.5281/zenodo.18112422
Cited by: 0

Abstract

Extract This workflow uses matUtils extract to extract a subtree from an UShER-formatted protobuff (.pb) phylogenetic tree. The samples_in_subtree file must have the name of each sample that is to go into the subtree, one sample per line.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
1 January 2026