sinhakrishnendu/BABAPPAlign: BABAPPAlign v1.1.3

Patch release (no algorithmic changes) Fixed Enforced mandatory explicit specification of the neural scoring model (--model) with no silent fallback. Restored correct progressive profile construction, ensuring all input sequences are retained in the final alignment. Ensured scoring model validation occurs before any embedding inference for improved correctness and reproducibility. Notes The alignment algorithm, neural scoring model, and numerical behavior are unchanged. This release resolves a packaging-related regression introduced during CLI enforcement. Version bump issued to ensure immutable source distribution compatibility with downstream package managers (e.g. Bioconda).