Metadata for the manuscript: Genomic Epidemiology of Streptococcus pneumoniae GPSC6: Post-Vaccine Expansion of AMR Susceptible Serotype 24F in Europe

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Authors: Magnus N Osnes, Eldholm Vegard
Cited by: 0

Abstract

This dataset contains genomic information from 972 Streptococcus pneumoniae samples, utilized in the reconstruction of the recent global pneumococcal sequencing cluster 6 (GPSC) genome epidemiology study. The dataset features isolate id, year of collection, country of origin, serotype, multilocus sequence type (MLST), antibiotic susceptibility estimates the pipelines at https://pathogen.watch/ to detect AMR using curated genetic determinants and PBP alleles identified using to predict betalactam non-susceptibility.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
2 January 2026
Document type
Dataset