Genome assembly and annotation - Vitis vinifera cv. Pinot noir clone 20-13 Gm

Description This dataset contains the phased diploid reference genome assembly and functional annotation for the grapevine cultivar Vitis vinifera cv. Pinot noir (clone '20-13 Gm'). Assembly Methodology The genome was assembled using a hybrid approach combining PacBio HiFi and Oxford Nanopore Ultra-long reads, with the software Hifiasm. It is resolved into two fully phased pseudo-haplotypes (PN_1 and PN_2).Pseudo-chromosomes belonging to Haplotype 1 have the suffix '_Hap_1', while the one belongings to Haplotype 2 have the suffix '_Hap_2' Files Included PN_20-13_DIPLOID.fasta.gz: The complete diploid assembly. PN_20-13_Genes_Mikado.gff3.gz: Gene annotations for the diploid assembly. PN_20-13_TE_EDTA.gff3.gz: TE annotations for the diploid assembly. PN_20-13_CG.bed.gz: bedMethyl output of modkit for the CG context. PN_20-13_CHG.bed.gz: bedMethyl output of modkit for the CHG context. PN_20-13_CHH.bed.gz: bedMethyl output of modkit for the CHH context. Related Study This resource supports the publication: "A dual genomic-epigenomic map of clonal evolution in grapevine" Raw Data: European Nucleotide Archive (ENA) Project PRJEB106155 Code: GitHub Repository https://github.com/HGU-Plant-Breeding/23_Pinot_Clones