AlexSTorson/CPB_diapause_transcriptomics: Version 2.0.0 - Updated KEGG enrichment scripts

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Authors: AlexSTorson
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Abstract

Improvements to KEGG Enrichment Pipeline This release updates the statistical analysis and visualizations of KEGG pathway enrichment analyses in the CPB diapause transcriptomics pipeline. Statistical Enhancements Gene Universe Background: Proper statistical background implementation across all KEGG enrichments Standardized Filtering: Consistent p.adjust ≤ 0.05 threshold throughout analyses Visualization Improvements Scaled Fold Changes: Dynamic scaling for pathway visualizations Module-Specific Plots: Enhanced pathview parameters for WGCNA module data Files Modified 05_CPB_Diapause_DE_KEGG_Enrichment.R 07_CBP_Diapause_DE_Overlap_Venn.R 13_CPB_Diapause_WGCNA_KEGG_Enrichment_Analysis.R Updated documentation and README Full Technical Details: See CHANGELOG.md for comprehensive documentation of all changes.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
5 January 2026