AlexSTorson/CPB_diapause_transcriptomics: Version 2.0.0 - Updated KEGG enrichment scripts
Abstract
Improvements to KEGG Enrichment Pipeline This release updates the statistical analysis and visualizations of KEGG pathway enrichment analyses in the CPB diapause transcriptomics pipeline. Statistical Enhancements Gene Universe Background: Proper statistical background implementation across all KEGG enrichments Standardized Filtering: Consistent p.adjust ≤ 0.05 threshold throughout analyses Visualization Improvements Scaled Fold Changes: Dynamic scaling for pathway visualizations Module-Specific Plots: Enhanced pathview parameters for WGCNA module data Files Modified 05_CPB_Diapause_DE_KEGG_Enrichment.R 07_CBP_Diapause_DE_Overlap_Venn.R 13_CPB_Diapause_WGCNA_KEGG_Enrichment_Analysis.R Updated documentation and README Full Technical Details: See CHANGELOG.md for comprehensive documentation of all changes.
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 5 January 2026