nfdi4plants/nfdi4plants.knowledgebase: 1.0.0

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Authors: Dominik Brilhaus, Kevin L. Frey
Cited by: 0

Abstract

First citable release of the DataPLANT Knowledge Base. The Knowledge Base was grown and polished with various contributions since mid 2022 as summarized below. What's Changed Polish README by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/3 polish tutorials by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/5 fix broken links due to sub-dir structuring... by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/6 Updated QuickStarts, moved to training section by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/9 add arc commander article by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/10 CWL notes and review ARC Quickstart by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/11 Minor update ARC QS and AC review by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/12 polished arcCommander after revision by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/13 Added Swate article and AC to sidebar by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/14 Update after revision, added Swate to sidebar by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/15 Update ArcCommander.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/17 markdown-to-pdf conversion by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/18 update intro by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/19 Minor updates by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/21 hide setup instructions by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/22 addition annotation patterns by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/26 change arcCommander, ArcCommander to ARC Commander by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/24 Change around DataPLAN and Data Management Plan by @xiaoranzhou in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/28 Minor layout change by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/29 Update Annotation Principles and minor changes by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/31 update link by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/32 minor change by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/33 copied arc commander wiki contents ("as-is") by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/34 Few typos and links corrected in contribution guide. by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/36 change to "index" by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/35 access, arc export, update sidebar by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/37 Restructure sidebar by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/41 rename wiki page and add link to dev docs by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/38 Filled the official contribution guide, added its rendering to 'Home'… by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/42 update links by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/43 Fixed the place and links of the contribution file allowing to render it aand being placed at a place defined in the GitHub Docs. by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/45 update link by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/46 Updated some files of the AC manual & some minor changes by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/49 fix file by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/50 reduce index by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/54 changes to AC manual files by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/53 Corrected typos, changed knowledge base to Knowledge Base and git to … by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/55 Corrected .md to .html in a link in the Contribution Guide. by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/56 Changed the used example link in the contribution guide. by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/57 minor changes by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/58 add FAQ section by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/59 Added answer to a question regarding the access token to the new FAQ … by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/60 split and restructure arc commander manual by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/61 updates to arc commander manual by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/66 fix macos installation by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/67 Add credential manager to QuickStart by @Martin-Kuhl in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/68 Corrected links in ARC Commander for QuickStart and Manual. Corrected… by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/70 Added two lines to the still hidden expert quickstart which we tested… by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/71 Update QuickStart_arcCommander_expert.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/76 Slide test by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/78 Update arc_installation_windows.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/74 Update arc_connect.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/75 Update QuickStart_swate.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/77 Solved #82 by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/83 Updated fornax. by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/84 Move Swate manual to Knowledge Base by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/89 add "TLDR" as "walk-through" to kb main page by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/90 Clean links by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/92 delete tests and unfinished docs by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/91 idea / suggestion: add hidden menu to knowledge base by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/93 re-add kb2pdf example to hidden menu by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/94 Added comment on a requirement (wget) and how to optionally install t… by @andreaschrader in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/97 small fix by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/95 fix dead link by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/100 hotfix: page not building by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/102 fix broken table by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/105 Specify Swate Desktop installation alternatives by @omaus in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/103 Readme, Contribution and License by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/79 fix registration link by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/108 Add knowledge base article about ontologies by @Hannah-Doerpholz in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/106 unify-wording-createAnnoTable by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/109 adapt "before we start" by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/113 corrected typo in study content by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/111 Update arc_installation_windows.md by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/117 Swate template creation by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/118 fix dead link by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/120 The teaching materials wedding by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/121 Marriage phase one by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/122 move teaching materials to own sidebar / menu by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/123 found a lonely > by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/126 update web-components and add key styling by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/124 add faq section by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/127 Update issue templates by @CMR248 in https://github.com/nfdi4plants/nfdi4plants.knowledgebase/pull/129 Ingest tm units by @Brilator in https://github.com/nfdi4plants/nfdi4plants.knowle

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
7 January 2026