Snakemake workflows for Cactus

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Authors: Gregg Thomas
Cited by: 0

Abstract

Minor changes to resource parsing to accommodate automatic partition selection from the snakemake slurm plugin. Added wildcard restraints to main pipeline to prevent snakemake from looking at the wrong files. Still determining if these are necessary for the other pipelines. Fixed GPU options in blast rules so multiple GPUs don't induce splits into multiple tasks/nodes

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
6 January 2026