Reproducible image-based profiling with Pycytominer
Abstract
What's Changed build(deps): bump pandas from 2.3.2 to 2.3.3 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/586 build(deps-dev): bump pytest-cov from 6.2.1 to 7.0.0 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/585 build(deps-dev): bump types-openpyxl from 3.1.5.20250822 to 3.1.5.20250919 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/584 build(deps): bump the python-packages group with 7 updates by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/583 build(deps): bump peter-evans/dockerhub-description from 4 to 5 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/587 build: End Python 3.9 support by @d33bs in https://github.com/cytomining/pycytominer/pull/588 build(deps): bump urllib3 from 1.26.19 to 2.5.0 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/590 build(deps): bump actions/upload-artifact from 4 to 5 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/592 build(deps): bump actions/download-artifact from 5 to 6 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/591 build(deps-dev): bump starlette from 0.47.2 to 0.49.1 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/593 build(deps): bump the python-packages group with 5 updates by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/594 build(deps-dev): bump ipython from 8.18.1 to 8.37.0 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/595 build(deps-dev): bump sphinx from 7.4.7 to 8.1.3 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/596 build(deps): bump pyarrow from 21.0.0 to 22.0.0 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/597 build(deps): bump sqlalchemy from 2.0.43 to 2.0.44 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/598 build(deps): bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/599 build(deps-dev): bump pytest from 8.4.2 to 9.0.1 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/603 build(deps): bump the python-packages group with 6 updates by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/602 ci: add codeowners file for reviewer assignments by @d33bs in https://github.com/cytomining/pycytominer/pull/601 build(deps): bump urllib3 from 2.5.0 to 2.6.0 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/604 build(deps): bump actions/cache from 4 to 5 in /.github/actions/setup-env by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/607 build(deps): bump actions/upload-artifact from 5 to 6 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/605 build(deps): bump actions/download-artifact from 6 to 7 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/606 build(deps-dev): bump filelock from 3.13.3 to 3.20.1 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/608 build(deps-dev): bump the python-packages group with 6 updates by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/610 build(deps): bump sqlalchemy from 2.0.44 to 2.0.45 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/611 refactor: enable Python 3.14 compatibility by @d33bs in https://github.com/cytomining/pycytominer/pull/609 build(deps): bump aiohttp from 3.12.14 to 3.13.3 by @dependabot[bot] in https://github.com/cytomining/pycytominer/pull/612 bump: version 1.3.0 -> 1.3.1 by @d33bs in https://github.com/cytomining/pycytominer/pull/613 Full Changelog: https://github.com/cytomining/pycytominer/compare/v1.3.0...v1.3.1
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 6 January 2026