SAMtoBAM/PAQman: V1.2.0

Changes Filtlong downsampling for faster Rasusa (and now purely random) Uses downsampled reads for coverage analysis to speed up alignment phase (minimum 50X coverage) Adds ability to input local meryl database (--meryldb) Adds user-modifiable parameters for meryl (--merylkmer and --merylmem) Adds --resume option for runs Change bedtools genomecov for samtools depth due to uncontrolled sorting issues and avoiding re-sorting (can be memory intensive) Adds option to input local busco database (--localbuscodb) Reduced mapping redundancy by proving CRAQ with prealigned reads also used for coverage analysis (and checked for consistency with default CRAQ alignment)