gbouras13/phold: v1.2.0

Improved ProstT5 3Di prediction throughput for phold run, phold predict and phold proteins-predict due to smarter batching implmentations Addition of phold autotune subcommand to detect an appropriate --batch_size for your hardware You can also use --autotune with phold run, phold predict and phold proteins-predict to automatically detect and use the optimal --batch_size (only recommended for large datasets with thousands of proteins) Manuscript now published: Bouras G., Grigson S.R., Mirdita M., Heinzinger M., Papudeshi B., Mallawaarachchi V., Green R., Kim S.R., Mihalia V., Psaltis A.J., Wormald P-J., Vreugde S., Steinegger M., Edwards R.A. Protein Structure Informed Bacteriophage Genome Annotation with Phold Nucleic Acids Research, Volume 54, Issue 1, 13 January 2026 https://doi.org/10.1093/nar/gkaf1448