common-workflow-language/cwltool: 3.1.20260108082145

What's Changed Drop Python 3.9 support by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2159 Discard undeclared fields from cwl.output.json by @GlassOfWhiskey in https://github.com/common-workflow-language/cwltool/pull/2177 Improve --parallel --singularity by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2187 --parallel execution limits by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2189 Fix use of extensions in $graph by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2181 Singularity, caching, and docker monitor tweaks by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2190 Reorganize the command line groups & add environment variables table by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2194 handle singularity/apptainer sandbox images by @natthan-pigoux in https://github.com/common-workflow-language/cwltool/pull/2166 ProcessGenerator: match Input/Output schema to ExpressionTool by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2198 Suppress erroneous warnings for pickValue by @LanderOtto in https://github.com/common-workflow-language/cwltool/pull/2197 printrdf: also include the input values by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2186 Tests Added new loop test by @LanderOtto in https://github.com/common-workflow-language/cwltool/pull/2188 Deps Update pytest requirement from =6.2 to >=6.2,=4.2.2,=22.1.2,!=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,